rs31103712 SNP Detail

Summary

• ID
  rs31103712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTATCA ATTGCTGGAC
  AAGGAAGTTT TCCATGTAAT AGTTTCTGAA AAACAGGTTT GGGGAAGGCC TGGACTTTGA
  AACAGGTCCA ACTTCTGTGG CTGTCATTCC TGGAATATGA ATACACTGAG TGCTTAAAAC
  TGAAAATCAA AGCTTCTCCT AATATATTTG TGCTAAAATG CAATGCCCTC AATTGTTAAC
  R
  GGGCATGATG CATTAATTTT ATAAATCAGT GGTTGTTTGT AGAGCTGGAA GCCTTGTGAC
  CTTGTGTTAG CTACTTTTTA CATGATTGGT GAAGGAGGAG AAAAATGGCC TCCCAATGCA
  GGATACTCTA GCACCCTACC TCTTAGACAA GTAGATTTGG GCTTGGCTTA AATTTTTTTC
  TCTGCACTAA TACCGAGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44997143	mCV23006753	ABI	CRAMUS_MOUSE	f	SNP		A	G			A	A
ss50605218	NES13645663	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A			G		A	A	G		G
ss146039577	ENSMUSSNP5742808	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
ss325719630	CHEV_19_10058319	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31103712					SNP	A	A	G	A	A	A	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605218	NES13645663	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961193 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Best1	bestrophin 1			1345 bp downstream
Fth1	ferritin heavy polypeptide 1			Intron
				Noncoding-Transcript-Variant
Gm36913	predicted gene, 36913			1309 bp upstream
Rr543964	regulatory region 543964			1322 bp distal
Rr543965	regulatory region 543965			1096 bp distal
Rr543966	regulatory region 543966			within coordinates
Rr543967	regulatory region 543967			502 bp proximal
Tssr155003	transcription start site region 155003			1118 bp downstream
Tssr155004	transcription start site region 155004			977 bp downstream
Tssr155005	transcription start site region 155005			711 bp downstream
Tssr155006	transcription start site region 155006			349 bp upstream
Tssr155007	transcription start site region 155007			418 bp upstream
Tssr155008	transcription start site region 155008			728 bp upstream
Tssr155009	transcription start site region 155009			1074 bp upstream
Tssr155010	transcription start site region 155010			1264 bp upstream
Tssr158131	transcription start site region 158131			1394 bp upstream
Tssr158132	transcription start site region 158132			1380 bp upstream
Tssr158133	transcription start site region 158133			1323 bp upstream
Tssr158134	transcription start site region 158134			1298 bp upstream
Tssr158135	transcription start site region 158135			1262 bp upstream
Tssr158136	transcription start site region 158136			889 bp upstream
Tssr158137	transcription start site region 158137			390 bp downstream
Tssr158138	transcription start site region 158138			436 bp downstream
Tssr158139	transcription start site region 158139			756 bp downstream
Tssr158140	transcription start site region 158140			977 bp downstream
Tssr158141	transcription start site region 158141			1028 bp downstream
Tssr158142	transcription start site region 158142			1044 bp downstream
Tssr158143	transcription start site region 158143			1103 bp downstream
Tssr158144	transcription start site region 158144			1260 bp downstream