rs31104211 SNP Detail

Summary

• ID
  rs31104211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9306072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAGAGCTA TCAGACATCT GTTGGATAAG AATTCAACCC
  CATCACAGCA ATATGGAAAT GTTAATGGTA ACTTTTAGAC TACAAAGTAC AGTCAGTGCT
  Y
  GGGAACTGCT GCTTTAGGCA GACCACAAGC TTCAAGAACA CTTGAAAGGA GGACTTCTTA
  CTTAGGGTGT TCACTTGCAA TGGTCTTGAA CTCGTTATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46481294	mCV22743181	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		T
ss46814989	NES10969851	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T		C	T	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31104211					SNP	T	C	C	C	T	T	C	C	T	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814989	NES10969851	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9306072 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	714 bp upstream
Rr689864	regulatory region 689864	1469 bp proximal
Tssr162899	transcription start site region 162899	1980 bp upstream
Tssr162900	transcription start site region 162900	1962 bp upstream
Tssr162901	transcription start site region 162901	1933 bp upstream
Tssr162902	transcription start site region 162902	1850 bp upstream
Tssr162903	transcription start site region 162903	1796 bp upstream
Tssr162904	transcription start site region 162904	1689 bp upstream
Tssr162905	transcription start site region 162905	1615 bp upstream
Tssr162906	transcription start site region 162906	1600 bp upstream
Tssr162907	transcription start site region 162907	1528 bp upstream
Tssr162908	transcription start site region 162908	1497 bp upstream
Tssr162909	transcription start site region 162909	90 bp downstream
Tssr162910	transcription start site region 162910	115 bp downstream
Tssr162911	transcription start site region 162911	169 bp downstream