rs31105651 SNP Detail

Summary

• ID
  rs31105651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36352296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCAGGTAA TTCGAGTGCC CTTCTCCAGA
  TTTTCCCTGA GTGAGTTCAT ATCCCAGATG AACTGGACAT CACCGGTAGA AATCACCAAA
  TTGGTGACTG TCCACCTGCA GCCCGCTGGG AGCCTTAGAT TCTGGTGAAG CCTCACTTAG
  R
  CCATACGCAT CAGTCTTAAA GTACTCCCAG TGAGGTTGTC TTGGTCCAGC TGTCTTAGTT
  TTTGAAATCC AGGTGCTGTG ACATGCCAGA TCTTTATGTC ACACTAAGGG ATAGATGGAG
  ACAGGAGTGT GAAGAAGCTC AGGCCAGAGC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44996874	mCV27594925	ABI	CRAMUS_MOUSE	f	SNP		G	A					G	G
ss51238001	NES14282051	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	G	G		G	G	A	G		G
ss148924950	ENSMUSSNP6113158	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss319688347	CHEV_1_36370060	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31105651					SNP	G	G	A	G	G	G	A	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238001	NES14282051	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36352296 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Gm70518	predicted gene, 70518	within coordinates
Rr409287	regulatory region 409287	1745 bp proximal
Rr409288	regulatory region 409288	1871 bp proximal