rs31105858 SNP Detail

Summary

• ID
  rs31105858
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22532834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATTATTCA AAAGATGTTT TCTAAAACTT TATTTTAATC
  TATAGTCTGG TCTAAGAGAC TGCAGTATTG GGCTTGCCTG GACCCAAGGA GTAACATAAG
  M
  ACTCAGCATA TGAAGACATA TTTCTGAATG TTTTACTTAC ATCCTAAACT GCATACAACT
  CTGATTAAAA AGTTCATGGC CACTAAAACG TCTGCTTAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45998289	mCV23506714	ABI	CRAMUS_MOUSE	f	SNP	A	A					C
ss48354576	NES12250137	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	C	C		A	C	C	A	C	C	A	A
ss145304012	ENSMUSSNP2571681	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31105858					SNP	A	A	C	A	C	C	C	A	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48354576	NES12250137	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22532834 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	1069 bp upstream
Rr392409	regulatory region 392409	1040 bp downstream
Rr523017	regulatory region 523017	407 bp proximal
Rr523018	regulatory region 523018	974 bp proximal
Tssr146602	transcription start site region 146602	941 bp downstream
Tssr146603	transcription start site region 146603	961 bp downstream