rs31106721 SNP Detail

Summary

• ID
  rs31106721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135673672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GGTCTTCATA TGTATGAACG
  Y
  ACACATACAT GTTCACCTTA ATTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44997618	mCV23240568	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss145544738	ENSMUSSNP6446691	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss319992923	CHEV_1_137642511	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31106721					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135673672 () rs orientation: forward

Symbol	Name	Function Class
Csrp1	cysteine and glycine-rich protein 1	within coordinates
Rr419261	regulatory region 419261	1648 bp distal
Rr419262	regulatory region 419262	289 bp proximal
Rr419263	regulatory region 419263	1725 bp proximal
Tssr222	transcription start site region 222	836 bp upstream