rs31106823 SNP Detail

Summary

• ID
  rs31106823
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66901507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG TCTCTGTTCA TCTTCAGGGT
  K
  CTCTAATTTT AAGAGCGTCA GAACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss44997898	mCV23098123	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss144520329	ENSMUSSNP2032492	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss319758730	CHEV_1_66908922	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31106823					SNP	T	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66901507 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	within coordinates
Cpgi339	CpG island 339	353 bp proximal
Rr412477	regulatory region 412477	219 bp distal
Rr412478	regulatory region 412478	within coordinates
Rr412479	regulatory region 412479	919 bp proximal
Tssr12011	transcription start site region 12011	906 bp downstream
Tssr12012	transcription start site region 12012	917 bp downstream
Tssr12013	transcription start site region 12013	947 bp downstream
Tssr12014	transcription start site region 12014	952 bp downstream
Tssr12015	transcription start site region 12015	969 bp downstream
Tssr12016	transcription start site region 12016	993 bp downstream