rs31109565 SNP Detail

Summary

• ID
  rs31109565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:150693998 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ACCAGGCCTG CCTCTGCCTC
  CCAAGTGCTG GGATTAAAGG CATGCACCAC CACACCTGGA TTGAAGTTAG TTTTAAGCTG
  TTACATTGGT GGGAATGAAA CTGTGGTTAT CTCTAGCCCC TCATGTCTTT ATTTTTAATT
  TACCCAATAA GGAGCCAGAT AGGTCAAAGA TACCACAAGA AAACCTACAG AATCAAATAA
  S
  CTGGGCCCAG AGGGGCTGAA ACTAGGTCCC TCCACATATC TAACAGATAT ACAGCTTGGT
  CTTGTGGGAG AAGCAGGGGC TGTTCCTTAC TCTGTTGTCT GCCTTTGGCT GCCTTATCTA
  GCCTCAACAG AAGATGCATC TAGTCCTACA GCAATTTGAT ATAGCAAGGT GGGTTGATAT
  CCATTGGCAG CCTCCTGTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46481512	mCV24692382	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	C
ss134505387	ENSMUSSNP3488961	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31109565					SNP	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150693998 () rs orientation: reverse

Symbol	Name	Function Class
Huwe1	HECT, UBA and WWE domain containing 1	Intron
Mirlet7f-2	microRNA let7f-2	1344 bp upstream
Rr694402	regulatory region 694402	within coordinates
Tssr162362	transcription start site region 162362	1440 bp downstream
Tssr162363	transcription start site region 162363	1136 bp downstream
Tssr162364	transcription start site region 162364	828 bp downstream