rs31110503 SNP Detail

Summary

• ID
  rs31110503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45433240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT CCATTCCACG ATGATCCTGC
  Y
  TCAGTTTCTC CAGTGAGCCC CCCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45998547	mCV24380726	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31110503					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45433240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19088	CpG island 19088	within coordinates
Cpgi19089	CpG island 19089	1567 bp proximal
Lmtk3	lemur tyrosine kinase 3	mRNA-UTR
Rr646575	regulatory region 646575	within coordinates
Rr646576	regulatory region 646576	142 bp proximal
Rr646577	regulatory region 646577	843 bp proximal
Tssr66636	transcription start site region 66636	84 bp downstream
Tssr66637	transcription start site region 66637	67 bp upstream
Tssr66638	transcription start site region 66638	1515 bp upstream
Tssr66639	transcription start site region 66639	1754 bp upstream
Tssr72472	transcription start site region 72472	1210 bp downstream