rs31110528 SNP Detail

Summary

• ID
  rs31110528
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:74917973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA GTCGCGGCGC AGTCCCGAAG
  M
  TCAGCCTAAG GGCTGGGGAG AGGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss46481923	mCV24989922	ABI	CRAMUS_MOUSE	f	SNP	A	C	C
ss134210534	ENSMUSSNP572621	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs31110528					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74917973 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pls3	plastin 3 (T-isoform)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr692140	regulatory region 692140			within coordinates
Rr692141	regulatory region 692141			197 bp proximal
Rr692142	regulatory region 692142			805 bp proximal
Tssr163681	transcription start site region 163681			155 bp downstream
Tssr163682	transcription start site region 163682			169 bp downstream
Tssr163683	transcription start site region 163683			734 bp downstream