rs31110715 SNP Detail

Summary

• ID
  rs31110715
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191448807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA TATTTTCACA TGGCAAAAGG
  M
  AACTTGCCTG TCATTCCTGG ATCAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44998012	mCV23003679	ABI	CRAMUS_MOUSE	f	SNP		A	A					C		A
ss60360936	NES15860014	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		C	A	A	A		C	A	A	A		C
ss146510359	ENSMUSSNP2545739	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss320195987	CHEV_1_193540574	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31110715					SNP	A	A	A	A	A	A	A	C	C	A	A	A	A	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360936	NES15860014	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191448807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1225	CpG island 1225	1009 bp proximal
Lpgat1	lysophosphatidylglycerol acyltransferase 1	1139 bp upstream
Rr426207	regulatory region 426207	649 bp proximal
Rr426208	regulatory region 426208	1204 bp proximal
Rr426209	regulatory region 426209	1284 bp proximal
Tssr10776	transcription start site region 10776	1185 bp upstream
Tssr10777	transcription start site region 10777	1298 bp upstream
Tssr10778	transcription start site region 10778	1340 bp upstream
Tssr10779	transcription start site region 10779	1375 bp upstream
Tssr10780	transcription start site region 10780	1560 bp upstream
Tssr10781	transcription start site region 10781	1683 bp upstream
Tssr10782	transcription start site region 10782	1700 bp upstream