rs31112478 SNP Detail

Summary

• ID
  rs31112478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16678556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC AGGAGGGGGC GGAGAGGTGA
  Y
  TGGGTCCGCG CAGGCGCAGA CCGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45998661	mCV23532821	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss322112024	CHEV_7_17529980	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31112478					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16678556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	within coordinates
Cpgi18407	CpG island 18407	1629 bp proximal
Gm71929	predicted gene, 71929	661 bp downstream
Pnma8b	PNMA family member 8B	51 bp upstream
Rr368243	regulatory region 368243	within coordinates
Rr642821	regulatory region 642821	1262 bp distal
Rr642822	regulatory region 642822	within coordinates
Rr642823	regulatory region 642823	5 bp distal
Rr642824	regulatory region 642824	1012 bp proximal
Tssr64660	transcription start site region 64660	14 bp upstream
Tssr64661	transcription start site region 64661	1063 bp upstream
Tssr70792	transcription start site region 70792	1018 bp downstream