rs31113875 SNP Detail

Summary

• ID
  rs31113875
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144100549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAATGAAG AAATGACCCT
  GGCTGATATG CCTTATTGAC AGAGTAGCCA CACAAACCAC GCTCAGTTGC TCTCCAAATT
  GCTGGTTTGC TTTAGGAGGT AGAGTAAGCT CTGCCACCCC ACTTGTAAAC AGCCCTCTCC
  TTACTCCACC CCCATTCACG GATTACTTAA TAAGCTAGTA GGTTTCTCTT CCGGGCAGAG
  S
  GAAATCAGCA AATCAGAAGC CTTCCAAATA AACTGGAAGT GGATGGTTTT ATTGTCTGCG
  TTCCCAGTCA CCTTGCCAAC AGCCCTCAGG ATTCAGAAAT GTCATTACAA ATTCTGTTCA
  AGAAATGCAG GACCCCTAAA CGTGGCCGAG GTCACCCCAC ACTGCCTCCA TCCTTGAAGC
  ACACTCTGAA CTTGGGGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47018626	NES10852625	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31113875					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018626	NES10852625	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144100549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	1784 bp proximal
Gm65349	predicted gene, 65349	454 bp downstream
Rr586642	regulatory region 586642	345 bp proximal
Rr586643	regulatory region 586643	1680 bp proximal
Rr586644	regulatory region 586644	1931 bp proximal