rs31115019 SNP Detail

Summary

• ID
  rs31115019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9730267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTTGCTGT TTCATCCTGA CTTCTGCTTC CATGAAAGAA
  GACATCAATA AACTAAGAAG GGCCCCATTG CAGGTTGAGT CATGATATTG GCCATCTTAA
  R
  TTCCAGAAGA AAACCTGATA GAGAGTAGAG CTTAGAGAAA CAAAATACAG CCATGCCTGA
  TGCCACAGAC CCATAACTGC ATCTGGTTGG GAGGCAGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46483302	mCV24735591	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		G
ss46817443	NES10973571	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G		G	G	A	G	G	A	A	G	G
ss134087585	ENSMUSSNP5139005	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31115019					SNP	G	G	A	A	A	G	G	A	G	G	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817443	NES10973571	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9730267 () rs orientation: forward

Symbol	Name	Function Class
Gm62614	predicted gene, 62614	within coordinates
Tssr5590	transcription start site region 5590	1913 bp downstream
Tssr160530	transcription start site region 160530	1885 bp downstream