rs31115116 SNP Detail

Summary

• ID
  rs31115116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55207653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGT GGATAGCTGT GTTTGGAATG
  Y
  CACTTGACTA CATCTCTCAT CCCGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39255822	mCV23144768	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T
ss52723001	NES15567961	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C	C		T	C	C	C		C
ss139574381	ENSMUSSNP6904682	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss324641242	CHEV_14_55589033	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31115116					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723001	NES15567961	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55207653 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	488 bp downstream
Rr492380	regulatory region 492380	1391 bp distal
Rr492381	regulatory region 492381	35 bp distal
Tssr125718	transcription start site region 125718	1513 bp downstream
Tssr125719	transcription start site region 125719	1421 bp downstream
Tssr125720	transcription start site region 125720	1396 bp downstream
Tssr125721	transcription start site region 125721	1384 bp downstream
Tssr125722	transcription start site region 125722	936 bp downstream
Tssr125723	transcription start site region 125723	894 bp downstream
Tssr125724	transcription start site region 125724	854 bp downstream
Tssr125725	transcription start site region 125725	13 bp downstream
Tssr125726	transcription start site region 125726	within coordinates
Tssr125727	transcription start site region 125727	29 bp upstream
Tssr125728	transcription start site region 125728	837 bp upstream
Tssr125729	transcription start site region 125729	1711 bp upstream
Tssr128753	transcription start site region 128753	1836 bp upstream
Tssr128754	transcription start site region 128754	1766 bp upstream
Tssr128755	transcription start site region 128755	519 bp downstream
Tssr128756	transcription start site region 128756	536 bp downstream