rs31116069 SNP Detail

Summary

• ID
  rs31116069
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144103541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGTAAT TAAGTTGCTA
  AGCACACATA CACACACACA CACACAACAT GCGCATACTT ATAAATATGT ATTTTATCTG
  AAGCACTATG TATAAACACT TATGTCGAAG GAGTCTATAG CTTCTAATTG GGCCACCGTC
  TCAAAATAAT CAAGCTGGTC TTAATAACAC TGCTTGAGGC TGGCTAGCAA GCAAAGAGGC
  W
  TCCTCAAGGA AGGTATTACT AATCCGTGGT TTTCACACTT ACAGCCTCAT TCATAGCATT
  AGTAAACGGC CCAGGGACCA GAGGATAGGG CACCCAAATG AGCTGTGAGA ACCATCTCTG
  TCCACCTGAG ACAGGCAGCT CTCGGAGCTA CAGAGTGCTC ACAGTTCCAA GTTGAAGAAG
  GGTTTGCCCG TCTCGGAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47018664	NES10852644	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31116069					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018664	NES10852644	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144103541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	989 bp distal
Gm65349	predicted gene, 65349	1041 bp upstream
Rr586643	regulatory region 586643	1062 bp distal
Rr586644	regulatory region 586644	892 bp distal
Rr586645	regulatory region 586645	1530 bp proximal