rs31116911 SNP Detail

Summary

• ID
  rs31116911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170978138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG CTAAAGTCAC CTCAGCAAGA
  R
  CGCAGCCATC TTGAGTTCCG GCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44998086	mCV24422422	ABI	CRAMUS_MOUSE	f	SNP	G	G					A		G
ss49750975	NES13034805	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	A	G		G	G	G	G		G	G	G	G		G
ss119995561	PARCsnp_1.11858	PARC_SEQ	INBRED	f	SNP							A		G
ss119997107	PARCsnp_1.00822	PARC_SEQ	INBRED	f	SNP							A		G
ss146155000	ENSMUSSNP2943513	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss320116723	CHEV_1_173080700	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31116911					SNP	G	G	A	A	A	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750975	NES13034805	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170978138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1011	CpG island 1011	within coordinates
Mpz	myelin protein zero	144 bp upstream
Rr396555	regulatory region 396555	82 bp upstream
Rr423226	regulatory region 423226	within coordinates
Rr423227	regulatory region 423227	12 bp proximal
Rr423228	regulatory region 423228	155 bp proximal
Sdhc	succinate dehydrogenase complex, subunit C, integral membrane protein	within coordinates
Tssr14985	transcription start site region 14985	23 bp downstream