rs31116965 SNP Detail

Summary

• ID
  rs31116965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117161977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATTGGTT AGTTTCAGGA
  GCTGTGGGTT TCAGGGCAGA CTTAAGTATA TTTGATCTCT GTGCTCATTA GCGTGAAGAA
  AGGCTCAGGA AGTTGGTTAA ACCCGAATTT TCACTTGCAT CCCATTTCAC AGACTTCTGA
  GAACTTGGGA GAAAATGTTA AGGTTATAGT GTTTGAGAGA ATCTGATGAG AGAAGATTAC
  R
  ACACCTTGTC CCTCCTGGGG TCCTGTTTCT TGCATGGCCA GCAGCCATTG TTTTATCTTC
  ACATGCCCTA AGCCTAGTGA TTTAAGAATC CAGTGTTTTG TAGGTGGAAC CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CCTTCCCTCT TTGTGTGTAT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39255743	mCV25043669	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss324842593	CHEV_14_117323787	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31116965					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117161977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	604 bp proximal
Gpc6	glypican 6	750 bp upstream
Rr497535	regulatory region 497535	375 bp proximal
Rr497536	regulatory region 497536	1382 bp proximal
Rr497537	regulatory region 497537	1573 bp proximal
Tssr127141	transcription start site region 127141	640 bp upstream
Tssr127142	transcription start site region 127142	694 bp upstream
Tssr127143	transcription start site region 127143	726 bp upstream
Tssr127144	transcription start site region 127144	814 bp upstream
Tssr127145	transcription start site region 127145	940 bp upstream
Tssr127146	transcription start site region 127146	951 bp upstream
Tssr127147	transcription start site region 127147	980 bp upstream
Tssr127148	transcription start site region 127148	993 bp upstream
Tssr127149	transcription start site region 127149	1207 bp upstream
Tssr127150	transcription start site region 127150	1238 bp upstream