rs31117043 SNP Detail

Summary

• ID
  rs31117043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144104043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT ATGTGGGTTT GAGCCGAAGG
  R
  TGTTTGACCA GGTCTCCCAC CGTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47018678	NES10852482	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A		G	G	A
ss136030759	ENSMUSSNP358827	ENSEMBL	ENSEMBL_Sanger	f	SNP		G									A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31117043					SNP	G	G	G	G	G	G	G	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018678	NES10852482	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144104043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	1491 bp distal
Gm65349	predicted gene, 65349	1543 bp upstream
Rr586643	regulatory region 586643	1564 bp distal
Rr586644	regulatory region 586644	1394 bp distal
Rr586645	regulatory region 586645	1028 bp proximal
Rr586646	regulatory region 586646	1644 bp proximal