rs31117558 SNP Detail

Summary

• ID
  rs31117558
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151028785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAAAGA AAGAAAGGAA
  GGAAGGAAGG AAGGAAGGAA GGAAGAAAGG AAGGAAGAGG AAATCGTGCT ATTATAGATG
  CTGTAGTAAG ATAATGTGCA GAAAAGCTGG GGAGAGGAAT CCAAAATGAT ATCAGGATGT
  ATGACATTAG TTTCTGAGGA CACAGTGATG CGGAGGGATA GGCCGGCAGC ATCTCCAGAA
  S
  TCTGTTAAAA CCACTAATTT TGTATTCTTC CCACTGGAAA GAAGACAAAA GTGTTGTGGA
  CATCTGTGGG TTTTGAGAGT AGCTTTTCTA TATCTGTATG CTACTGTGCT GCAACTTTAA
  AGAGAGCCCC TAATCAACAG GAATTTCCCA CCGCTAGGAA CCACAGCTCC ACCAGCTCTG
  TTTCCAACCT CTGTGACTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49704746	NES13067729	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31117558					SNP	C	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49704746	NES13067729	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151028785 () rs orientation: forward

Symbol	Name	Function Class
Gm36139	predicted gene, 36139	within coordinates
Gm70948	predicted gene, 70948	within coordinates
Rr420238	regulatory region 420238	90 bp proximal