rs31117560 SNP Detail

Summary

• ID
  rs31117560
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151027764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTGTG TGTGTGTGTG
  CCTATGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTAGG TCAAGGGGTG
  ACTATAGTTA GTCCATTCTC CCTCCTATAG GTCCTTGGGA CCAAACTCAG GTTGTTAAAC
  TTTCACAGCA AGTGCCTTTA CCTGCTCAGC CACCTCACTA GTTCGTGCGC CATAGAATTT
  W
  TAACTGACGC TAATAATAGC CAATATGTTC AGCTGCCAAT GGGAACTCTG AAGCTGCGGT
  GTGATGATTT TTATGGGGTC TTAATATATA GTTAGAATAT GCCTATACGG GACTTGGCTG
  ATTCTCCAAT TACATAGCTC CCTGAGCTGT GGAGAATTAT TGGAGAAATA TCAAGCAAAT
  CTCTGGGATT CCCATGACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49704748	NES13067746	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31117560					SNP	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49704748	NES13067746	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151027764 () rs orientation: forward

Symbol	Name	Function Class
Gm36139	predicted gene, 36139	within coordinates
Gm70948	predicted gene, 70948	within coordinates
Rr420238	regulatory region 420238	1111 bp proximal