rs31117561 SNP Detail

Summary

• ID
  rs31117561
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151027236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGATCAG CTGCCTGTCC
  TCCATCATGC CAGGGACTAA GGTCCAGGCT CTGGCATTGA AATGGTAATA GTTCAAGGTC
  CTATTAGATT TTTTTACAAT TTAAAAAAAT TCTAGATCTG GGTTGTAAAA GGTCAGTCGG
  AGCCACTGTA ACTCTCGTCA TCAAGTGCTG TGACCATCAA GGCATTTCCA GGCCTGGAAG
  K
  AGTGAAAAGC CACTTTTGAA GAAGAAGCAT GCAGTGACAG GAAAACAGGC ATTGTATATT
  CTTCCCCCTC CACCCCTCCC ACATCCTTTC ACAAAGGGAA GCATTGGATG AGAGCTCTGG
  CCATTCATCA AAGTAACTAA TGTATCAGAG AAGGGAAACA TCAATATTCA GCCTTTTAGA
  TTTTTACTAA AAATACCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss49704749	NES13067800	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs31117561					SNP	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49704749	NES13067800	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151027236 () rs orientation: forward

Symbol	Name	Function Class
Gm36139	predicted gene, 36139	within coordinates
Gm70948	predicted gene, 70948	within coordinates
Rr420238	regulatory region 420238	1639 bp proximal