rs31117562 SNP Detail

Summary

• ID
  rs31117562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151026086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCTGGCTG GTTGAACAAA ATAACAACCC
  AGTTGATGTT ATTGAATGCA ATTCCCATAG TCACCTACAT GGGAAGGTCA TTGTAGAAAA
  GCTCTGGACG AGCCAGAATC ACATAAAGGA GAGAGGTACC ACAAGGACAG TGAACATGAG
  K
  TAACTATTTT TCCCGACTTT GGGCAGCCTG AAAGACGATA AAATATTGTA GCTAaaatgt
  cccccgcagg gtcatgtgtt tcaactcttg actgcacttg gacctgggcc tggagttagg
  atctagctga aggaagcggg ccactagggg                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss49704750	NES13067804	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	T		G	G
ss320054286	CHEV_1_152997465	CHEVERUD	SCREENING_POP	f	SNP						T			G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs31117562					SNP	G	T	G	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49704750	NES13067804	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151026086 () rs orientation: forward

Symbol	Name	Function Class
Gm36139	predicted gene, 36139	within coordinates
Gm70948	predicted gene, 70948	1077 bp upstream