rs31117813 SNP Detail

Summary

• ID
  rs31117813
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30737517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGACCTGC CTGCCAGGGC TCCCTCCACA TGGGGGTATT
  CCAGGCTGAA ATACCAGGTG ACACCTTGCT GGGATGGAGT AGGGACTCTC TTTGAACAGT
  S
  CAGGAGAATT AAATGTGCGC CCACTACCAG TCTTCACCTG GTAGTTTTAA AAACAAAACA
  AAACGAGATA AAATTGGGTC TCTTCAGGCT GATCTTAAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45999104	mCV22838015	ABI	CRAMUS_MOUSE	f	SNP	G	C						G
ss60989526	NES16136129	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	G	G	C	C		G	C	G	G		C
ss322138605	CHEV_7_31823111	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31117813					SNP	G	C	C	C	C	C	G	G	C	C	G	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989526	NES16136129	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30737517 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	779 bp downstream
Rr644981	regulatory region 644981	1093 bp distal
Rr644982	regulatory region 644982	797 bp distal
Tssr65831	transcription start site region 65831	1084 bp downstream
Tssr65832	transcription start site region 65832	675 bp downstream
Tssr65833	transcription start site region 65833	236 bp downstream
Tssr65834	transcription start site region 65834	205 bp downstream
Tssr71891	transcription start site region 71891	1593 bp upstream
Tssr71892	transcription start site region 71892	998 bp upstream
Tssr71893	transcription start site region 71893	225 bp upstream
Tssr71894	transcription start site region 71894	202 bp upstream
Tssr71895	transcription start site region 71895	173 bp upstream
Tssr71896	transcription start site region 71896	143 bp upstream
Tssr71897	transcription start site region 71897	967 bp downstream