rs31117891 SNP Detail

Summary

• ID
  rs31117891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144104215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGATAT GTGGGTTTGA
  GCCGAAGGGT GTTTGACCAG GTCTCCCACC GTTGCACTGA TTTCCACACA AGGCAATGGT
  AAGAATGTGC CGCCACAGGC AGAGTCACCC TAGTGGTATC ACAGTGCAAT TGCATCTGGT
  GTCTCATTTC AGAAGGCAAG GATCTGGAGA AAATTCCATT GTGGGAATAA GGAAGCCAGT
  R
  TGCTCACATG TTTTATCTCC TATGCATGGC CACATCCTCT CTGATAGCCT CTCTTCCACC
  CTGGGGGCGA ATTAAAAACA TGGTATATAA AACGTGCCTT TCAATTTTTC TGCAGTTTGG
  TAAAAGTCTG GGCCAAGGTC TTAGACTTGG TAGCAACTGG TACTGTTTAC TGAGTCCTTT
  TGATTTGCCA CTAGGGTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47018686	NES10852487	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	A	G		A	A	A	A
ss136030777	ENSMUSSNP2920515	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31117891					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018686	NES10852487	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144104215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	1663 bp distal
Gm65349	predicted gene, 65349	1715 bp upstream
Rr586643	regulatory region 586643	1736 bp distal
Rr586644	regulatory region 586644	1566 bp distal
Rr586645	regulatory region 586645	856 bp proximal
Rr586646	regulatory region 586646	1472 bp proximal
Rr586647	regulatory region 586647	1856 bp proximal