rs31118068 SNP Detail

Summary

• ID
  rs31118068
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142955888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGATAT GGGATTGTAC
  ATCTCTGATG AGATGGAGGG AGTGACTGAG AGCCATGGAA TAATCAAGCA CTCCAGGACC
  AAATTGGAGA GGTGTTAATG GAATATGTCT GAGTATAAGT CCAGCAGGGA TGCTTGAGCA
  GGCAAAGACA CGTAAGGGTT TATGAGAGTG GATAGCCAAC TATGTATGTA GCGTGGAAAG
  W
  GCAGGAAGTG GAGAATATAT GAGGGTCTTG TCTAACAGAG CAACAGAGCC TCTGCCAAGA
  GAAGAAAGCA TTGGTCAGTA GGTTCAGTGC AACGAATTGT GGTGGTTTTC ATCCCTTTCA
  GGAGAACAAA GAGCTCCTGT TGACACATTT TGAAAGTCTT ATTAGTATAT TAAGTCACTT
  TTGGCTCTCA ACCCTGTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45506176	mCV24084476	ABI	CRAMUS_MOUSE	f	SNP		A					T
ss47018313	NES10854374	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	T	T	A		T		A
ss321005090	CHEV_3_142913091	CHEVERUD	SCREENING_POP	f	SNP												A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs31118068					SNP	A	A	A	A	A	A	T	A	T	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018313	NES10854374	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142955888 () rs orientation: forward

Symbol	Name	Function Class
A830019L24Rik	RIKEN cDNA A830019L24 gene	within coordinates
D3Mit258	DNA segment, Chr 3, Massachusetts Institute of Technology 258	578 bp proximal
Gm65378	predicted gene, 65378	within coordinates