rs31118715 SNP Detail

Summary

• ID
  rs31118715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:144104308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGCAGA GTCACCCTAG
  TGGTATCACA GTGCAATTGC ATCTGGTGTC TCATTTCAGA AGGCAAGGAT CTGGAGAAAA
  TTCCATTGTG GGAATAAGGA AGCCAGTATG CTCACATGTT TTATCTCCTA TGCATGGCCA
  CATCCTCTCT GATAGCCTCT CTTCCACCCT GGGGGCGAAT TAAAAACATG GTATATAAAA
  Y
  GTGCCTTTCA ATTTTTCTGC AGTTTGGTAA AAGTCTGGGC CAAGGTCTTA GACTTGGTAG
  CAACTGGTAC TGTTTACTGA GTCCTTTTGA TTTGCCACTA GGGTTATTTT AGTATAGATC
  AAACTTCCTG TGGGTTAGGT AGTGGCAGGG GACAGATGCT GGAGACATTA AGCATGTGAT
  TGGCCAGAAG GGTGAAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47018690	NES10852490	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C		C	C	C	C
ss136030783	ENSMUSSNP6268276	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31118715					SNP	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018690	NES10852490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144104308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13898	CpG island 13898	1756 bp distal
Gm65349	predicted gene, 65349	1808 bp upstream
Rr586643	regulatory region 586643	1829 bp distal
Rr586644	regulatory region 586644	1659 bp distal
Rr586645	regulatory region 586645	763 bp proximal
Rr586646	regulatory region 586646	1379 bp proximal
Rr586647	regulatory region 586647	1763 bp proximal