rs31119108 SNP Detail

Summary

• ID
  rs31119108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142957615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCACTAA TAGCTTCTAT
  ATGGAAGAAT TCTTCCAGCC TCCTTGAATA AACATCTGTT GGAAACACCT TAGCACCGAT
  CATTTGTAAT AGTTTATTAA AGTGGTACCT GGCAATGTGT CTATGTAGTT AAAGGCTTGC
  TTATTACTAA GTTCCATTTT TCTTTTTGAA GATTTTATTA CTCAAGAATT TCCAGTCTTA
  Y
  CACCTCAAAC CTTATATATG CAGTTGTTCT CAGCATTGTT TTAGAGAAAC GTGAACTGTG
  ATGGGTGATG AGTGTACATT AGAGTGAAAG AGAGAGAGGG AGGGAGGGGG GAAGAGCGAG
  AGAGGGAGAG AGGGAGAGAG AGAATCTTTT TTCCTTGCTT TGTAATCATA CTTTTTCCTC
  CCTGAATGTG TGCGTTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47018323	NES10854269	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31119108					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47018323	NES10854269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142957615 () rs orientation: forward

Symbol	Name	Function Class
A830019L24Rik	RIKEN cDNA A830019L24 gene	within coordinates
D3Mit258	DNA segment, Chr 3, Massachusetts Institute of Technology 258	933 bp distal
Gm65378	predicted gene, 65378	within coordinates