rs31119285 SNP Detail

Summary

• ID
  rs31119285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22037853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC CCCGCGGTGC GCGGTGTCTG
  Y
  CTCGGGCTGC GCCCTGCGCT GCGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39256075	mCV22932357	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss139201791	ENSMUSSNP3768612	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss324567170	CHEV_14_22807007	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31119285					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22037853 () rs orientation: forward

Symbol	Name	Function Class
A330001L22Rik	RIKEN cDNA A330001L22 gene	1836 bp upstream
Cpgi6225	CpG island 6225	1099 bp distal
Cpgi6226	CpG island 6226	within coordinates
Cpgi6227	CpG island 6227	1134 bp proximal
Rr488632	regulatory region 488632	1593 bp distal
Rr488633	regulatory region 488633	1510 bp distal
Rr488634	regulatory region 488634	1729 bp proximal
Rr488635	regulatory region 488635	1806 bp proximal
Tssr127699	transcription start site region 127699	276 bp upstream
Tssr127700	transcription start site region 127700	212 bp upstream
Tssr127701	transcription start site region 127701	76 bp downstream
Tssr127702	transcription start site region 127702	100 bp downstream
Tssr127703	transcription start site region 127703	209 bp downstream
Tssr127704	transcription start site region 127704	629 bp downstream
Tssr127705	transcription start site region 127705	1690 bp downstream
Zfp503	zinc finger protein 503	within coordinates