rs31119550 SNP Detail

Summary

• ID
  rs31119550
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:59935253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATTATCAGGA CTCCAGCATA TTGGTTATAA AATTTATTGA TCTCTCACTT AGCAATTAAG
  AACAAAACTT TGAAAAAACC TGGAACAAAA TAACCCCTTC CCCACCACCC GAACGAAATG
  CGTACACGAA ATAGCAAATA GATCACTGCA GAAATCACAA ACTCAACAGC CTAAACGCGC
  ACTGGACAGA GCTGTCCCGC GGCCAGGGGC GGCAAGGCGG GAAACACACG CACACCTGGC
  TATAAATTAA CATTGGCTTT AGCTGTCGCG CCAATTGGCG CGGCCAGCAC CCCCCCCCCC
  M
  AAAAAAAGCC AGAGGAAAAC AGAAGCAATA CGACTGGGGG TGGAGGCATT GCAGTTCTTG
  GGGGCGGGCA ACCTCACTCA GTTCTCGATT AATAGCAAAC TAACAAGACA TTTTCAACTG
  CAACAGAAGA ACCTAGGAAT CCGGGAAGAG GAAGGGGCCG CGGTTTCTCC GCAAACACCA
  CAGCGATTCC CAGCCAGAGG GGGAGGGAGG GGCAGTGGTC AGAAGCCAGC GGCTCTAGCA
  AGTCCCATTT CCGCTGCTCG GGACTTCTCG CTTTTGTACA AAACCCCGAC AGTTACGGCC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46482782	mCV22710108	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31119550					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:59935253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22744	CpG island 22744	155 bp proximal
Rr691596	regulatory region 691596	426 bp distal
Rr691597	regulatory region 691597	within coordinates
Rr691598	regulatory region 691598	542 bp proximal
Rr691599	regulatory region 691599	1773 bp proximal
Sox3	SRY (sex determining region Y)-box 3	within coordinates
Tssr5624	transcription start site region 5624	871 bp downstream
Tssr163494	transcription start site region 163494	55 bp downstream
Tssr163495	transcription start site region 163495	378 bp downstream
Tssr163496	transcription start site region 163496	1029 bp downstream
Tssr163497	transcription start site region 163497	1790 bp downstream