rs31121925 SNP Detail

Summary

• ID
  rs31121925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:26835974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG GAATCCATAT AAACTTACAC
  R
  CTCTGGGCTG CTGAGAATGT TAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss39256377	mCV22747328	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss139210876	ENSMUSSNP2772122	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss324569417	CHEV_14_27927203	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs31121925					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:26835974 () rs orientation: forward

Symbol	Name	Function Class
Arhgef3	Rho guanine nucleotide exchange factor 3	882 bp upstream
Cpgi6253	CpG island 6253	508 bp proximal
Rr287890	regulatory region 287890	1374 bp distal
Rr287891	regulatory region 287891	within coordinates
Rr296929	regulatory region 296929	226 bp proximal
Tssr124726	transcription start site region 124726	830 bp upstream
Tssr124727	transcription start site region 124727	878 bp upstream
Tssr124728	transcription start site region 124728	1141 bp upstream