rs31123339 SNP Detail

Summary

• ID
  rs31123339
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12570192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCA CTGTAGAAGA GGAAAACCCT
  K
  GACTGAACTG CATCTTGTGC CTTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45999290	mCV23046829	ABI	CRAMUS_MOUSE	f	SNP		T	T				G		T
ss51469407	NES13983779	PERLEGEN	MM_PANEL2	f	SNP	T		T	G	T	T		T	T	T	T		T	T	T	G		G
ss148340702	ENSMUSSNP5277338	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						T
ss322106506	CHEV_7_13421614	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31123339					SNP	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469407	NES13983779	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12570192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	846 bp distal
Rr642383	regulatory region 642383	1494 bp distal
Rr642384	regulatory region 642384	1319 bp distal
Rr642385	regulatory region 642385	772 bp distal
Rr642386	regulatory region 642386	418 bp distal
Tssr64479	transcription start site region 64479	1454 bp downstream
Tssr64480	transcription start site region 64480	1213 bp downstream
Tssr64481	transcription start site region 64481	1004 bp downstream
Tssr64482	transcription start site region 64482	311 bp downstream
Zfp110	zinc finger protein 110	within coordinates