rs31125578 SNP Detail

Summary

• ID
  rs31125578
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79783676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT AAAAATATTC ACATCAGGTA
  W
  CTTCCAAAGT CACATCTCTA CCTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45500347	mCV23428676	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A	T
ss135376865	ENSMUSSNP2354973	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss320812404	CHEV_3_79680291	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31125578					SNP	T	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79783676 () rs orientation: forward

Symbol	Name	Function Class
Gm36569	predicted gene, 36569	within coordinates
Rr578599	regulatory region 578599	1971 bp proximal
Tssr29594	transcription start site region 29594	892 bp upstream
Tssr29595	transcription start site region 29595	915 bp upstream