rs31126160 SNP Detail

Summary

• ID
  rs31126160
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43116398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGAGCAG AAACAAGGTT TTGTCCTACA CTTCTGGGTG
  GGAAGACAGC AGGAACGGGG CATTTCTGAG ACCAAACCCC TGGTCTCAGA AAGAGGACGA
  R
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGGAGCTAAT GATTATGAGT CTCCCAGTCT
  AGAGTCCTAT GACATGTGAC CAAAAGCGAA TGAATGAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45999241	mCV22871802	ABI	CRAMUS_MOUSE	f	SNP		A	A	G
ss149073730	ENSMUSSNP3147148	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss322197035	CHEV_7_50722344	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31126160					SNP	G	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43116398 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	963 bp distal
Cpgi18933	CpG island 18933	159 bp distal
Gm39000	predicted gene, 39000	607 bp upstream
Rr400282	regulatory region 400282	943 bp downstream
Rr645967	regulatory region 645967	1445 bp distal
Rr645968	regulatory region 645968	872 bp distal
Rr645969	regulatory region 645969	1375 bp distal
Rr645970	regulatory region 645970	683 bp distal
Rr645971	regulatory region 645971	376 bp distal
Tssr66010	transcription start site region 66010	953 bp downstream
Tssr72135	transcription start site region 72135	1384 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates