rs31126313 SNP Detail

Summary

• ID
  rs31126313
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150871205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagaatcgt attgaaatat aggactctgt
  ggatctgtca atcttcttga agttctgtga ggttttgctt tgtgcctttt gaacgtttgt
  aactaagtgc agagagtatt atgtcctctt gattgatAAA CATATCTTTA AAATTATGAC
  W
  CAACATTCAT TTTCAAAAAC GTTACGTGTG CAGGAGACac ttgaagctgt ttcattgctc
  actaacattg tgttcatttt ccttaattgt tccctttctt ccctagtttc attttaatag
  tttctatact atgtctttat gttctcttag                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49705590	NES13072040	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A		T	A	T
ss320052997	CHEV_1_152842584	CHEVERUD	SCREENING_POP	f	SNP					A				T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs31126313					SNP	T	A	T	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49705590	NES13072040	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150871205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	1661 bp distal
Gm29188	predicted gene 29188	within coordinates
Rr420193	regulatory region 420193	1913 bp distal
Rr420194	regulatory region 420194	1574 bp distal
Rr420195	regulatory region 420195	1460 bp distal
Rr420196	regulatory region 420196	418 bp distal