rs31127085 SNP Detail

Summary

• ID
  rs31127085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150870349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGGAAA CTTTACGGTG
  GAAAACATTA CAATGTTCTT CCAAGTCGCA ATCATTATAT ACATTATAGC CGGATTAACA
  GATTTCAGAA GGTAAGCGAA GAAAGTCATT CATGCGCTAA CCATTCTTTG TTCCCCTTTA
  ATAAATACGC CCCCCTCCCC CAGGAAAGGG GCTATTGTCT GGATGCAAGC ATTCGAAGTA
  Y
  AGCACTTGGG CAGCTTTAAA CTGGGTTTGA GTGTGTATGA GACCACCCTC TAGCATGGGG
  CAGCCTGAGA AAGGGCCAGC TCCCACCAGC CTTTTATAAT CTCCAACTGT CTTCTCTTTC
  AGACCCACCA TCTGTGGAAC TTGATTTTAT GATACCTATA AGTCATGTCA CTTAAAGGAA
  GCACACGGGC CATTTGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49705592	NES13072135	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31127085					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49705592	NES13072135	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150870349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	805 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	1163 bp upstream
Rr420192	regulatory region 420192	1959 bp distal
Rr420193	regulatory region 420193	1057 bp distal
Rr420194	regulatory region 420194	718 bp distal
Rr420195	regulatory region 420195	604 bp distal
Rr420196	regulatory region 420196	within coordinates
Tssr14167	transcription start site region 14167	1443 bp upstream
Tssr14168	transcription start site region 14168	1149 bp upstream