rs31127088 SNP Detail

Summary

• ID
  rs31127088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150869686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGTTTTTT CCCCTAATGT
  CTGTGCAAAG CTGCTTCAGA CAACACCTAA TTCCCCAGCC CACCCCAAGT GCAGAAGCTA
  AGATGCCCCA GCCTAGCTTC CTGTCCCTCA ACCCAACATT CAGCCCCGCC AGAAGGGGGA
  GCTGGAGCTT TCTTTCCTCT AGGCTGCAGC TACAGGATGG ATGGTTCTTT GATCTTCCTT
  R
  GGGAGTGTTT AGATGAGAGG AAGGCACGGA GTTGGGAGAG GCAGGGAGAG GGAGCTGTAG
  AGGCAAAGGA GAATGGAAGG AGATAGGGGG AAAGTAAGAG ACATCACAAA GTCCCTAGCT
  GTGCTGTGGA ACTGGGAAAG GAAACTGGGT ATCAATAAAA CATTGACGTC CAATAGAAAG
  AGCAGTGTTT GTCTGTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49705595	NES13072130	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31127088					SNP	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49705595	NES13072130	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150869686 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	142 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	500 bp upstream
Rr420192	regulatory region 420192	1296 bp distal
Rr420193	regulatory region 420193	394 bp distal
Rr420194	regulatory region 420194	55 bp distal
Rr420195	regulatory region 420195	38 bp proximal
Rr420196	regulatory region 420196	568 bp proximal
Tssr14167	transcription start site region 14167	780 bp upstream
Tssr14168	transcription start site region 14168	486 bp upstream