rs31127089 SNP Detail

Summary

• ID
  rs31127089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150869650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG GAGCTTTCTT TCCTCTAGGC
  W
  GCAGCTACAG GATGGATGGT TCTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49705596	NES13072128	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T		A	T	A
ss320052980	CHEV_1_152841029	CHEVERUD	SCREENING_POP	f	SNP						T				A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs31127089					SNP	A	A	T	A	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49705596	NES13072128	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150869650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	106 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	464 bp upstream
Rr420192	regulatory region 420192	1260 bp distal
Rr420193	regulatory region 420193	358 bp distal
Rr420194	regulatory region 420194	19 bp distal
Rr420195	regulatory region 420195	74 bp proximal
Rr420196	regulatory region 420196	604 bp proximal
Tssr14167	transcription start site region 14167	744 bp upstream
Tssr14168	transcription start site region 14168	450 bp upstream