rs31128149 SNP Detail

Summary

• ID
  rs31128149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15199459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCAGTT GACGTCAACG
  TATTTCCAGA AAAGAAAATA GTTTTGTGTT CCCAGGACAA AATACCCCCC AGGGCAAGTC
  CCTACTGGCA AAAGCCAGGC GATGGGGGTG GGGTATAGCA GGACTAGGGA GGGGGAATTG
  CCACCCAGTC ACCAATCGCT TTTTAACGGA CTTGGAGAAA CAGCAGTTTC AGGAGCTGCC
  Y
  GGACAATTTT CGAACAACCA GCAAGACCCG AATTTAAACT AGGGACGAAA GAAACACACC
  TTGGAAAGTA TGCTTTGGCC TGATCGTTGC AGAACTGTTC TTCTCGCACC ACCTTCTGAC
  CGGCTACCAA TACTTTATAC CTATAAGGAC ACTTCATCAG ACACTGAAAC AGGTTATTAA
  CCAACATAGT TACGGAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	SM/J
ss49206267	NES12682581	PERLEGEN	MM_PANEL2	f	SNP	C	T
ss325532720	CHEV_18_15224911	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	SM/J
rs31128149					SNP	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49206267	NES12682581	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15199459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	1232 bp distal
Gm58434	predicted gene, 58434	within coordinates
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr393314	regulatory region 393314	within coordinates
Tssr152519	transcription start site region 152519	1959 bp upstream
Tssr152520	transcription start site region 152520	1926 bp upstream