rs31128907 SNP Detail

Summary

• ID
  rs31128907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144219692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGTATAAA CCCTGCTTCA
  ACCCCTACTA GGCTCCAGAG TCCTCACCTG GTGGCTGGGA TCGATCAGTG ACTCTGCTTA
  TGTGGTGGGA ATAAAGAAAG CCTTTGCTGT TTCACAAGGC CACTAGAGCT TTCTCCCCTT
  AGCCACACAA TGAGCACGGA TGGTGTGACA CTTCTCAACA GGTGTTCAGT GCCAACCACA
  Y
  TCGCAGAGGC TGCAATACTG ACATCAGTCT TACCTGGCTT TGGAAGCAGT GGTGAGGGAG
  AGAGACCAGA AGTGCTCTTT CCTTTTCTGA GTAGCTTGTG GAACACAGCT CTCGGCAGTA
  AATGCTTCAT CATTTGGTCA AGTGGTACTT CAGGGAAGTT TGGAACAAAC TTGTTTCTGA
  TCATTAATTC CATGGCTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47020090	NES10845978	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31128907					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47020090	NES10845978	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144219692 () rs orientation: forward

Symbol	Name	Function Class
Hs2st1	heparan sulfate 2-O-sulfotransferase 1	Intron
Rr586664	regulatory region 586664	327 bp distal