rs31134093 SNP Detail

Summary

• ID
  rs31134093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9894987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTACATCA GTCTTCTGAG
  AGCAAAAGAA AACGGATGTG TGTGTTTTGA GGGGGGGAAG GATTTCTTGT AGATTTAAAA
  GTGACAACAG AAAATCCACT ATAACAACAC AAATAGGAAA TAAAACATCC ATATGGAAAT
  TATTTTCACA GGGTTAGCTC TAGTTATAGC CATGTTCCAG GGAGACATTT GATCAGAAAA
  Y
  CCAGAACAGG GAACAGCTGG AATCTAGCTA CTGAGGCAAA GTGTGTATGT ATTGTTTGAA
  AAGGAAGGAT GAAATATCAG TAGAGAGAAC TCGGTTGGTG GCAGGAGTTC TTTTTGGCAT
  ACTGCAGTTG TGGCGTTGTG CCTCCAAAGG CTCTCAGAAG CTCACTACTG GAAACTCACT
  GTTGAGCAGC TTTGGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45501919	mCV23605621	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss134577498	ENSMUSSNP1239032	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31134093					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9894987 () rs orientation: forward

Symbol	Name	Function Class
Gm55352	predicted gene, 55352	199 bp upstream
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	within coordinates
Rr78180	regulatory region 78180	613 bp proximal