rs31135049 SNP Detail

Summary

• ID
  rs31135049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40503437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA AAAGCATGCT GTGTACATAA
  Y
  TGTCTCATGT CCCAGAACGT GCAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45000085	mCV24152770	ABI	CRAMUS_MOUSE	f	SNP	T	C					C		C
ss60721691	NES16361176	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C		C	C	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31135049					SNP	T	C	C	C	C	C	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721691	NES16361176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40503437 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	within coordinates
Il18r1	interleukin 18 receptor 1	1275 bp upstream
Rr16188	regulatory region 16188	1164 bp proximal
Rr29358	regulatory region 29358	1363 bp proximal
Rr371160	regulatory region 371160	976 bp upstream
Tssr6463	transcription start site region 6463	1944 bp downstream
Tssr6464	transcription start site region 6464	1919 bp downstream
Tssr6465	transcription start site region 6465	1364 bp upstream
Tssr6466	transcription start site region 6466	1426 bp upstream
Tssr6467	transcription start site region 6467	1688 bp upstream
Tssr6468	transcription start site region 6468	1699 bp upstream
Tssr6469	transcription start site region 6469	1792 bp upstream
Tssr6470	transcription start site region 6470	1811 bp upstream
Tssr6471	transcription start site region 6471	1903 bp upstream