rs31137335 SNP Detail

Summary

• ID
  rs31137335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51321492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGG GACACCAACC AACAAACCAA
  Y
  CAAATTACTA GTTGGTGGGA AGGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45502210	mCV22575720	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss135173250	ENSMUSSNP1206110	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320762670	CHEV_3_51217993	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31137335					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51321492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13139	CpG island 13139	1583 bp proximal
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	1945 bp upstream
Rr397658	regulatory region 397658	1762 bp upstream
Rr576314	regulatory region 576314	231 bp distal
Rr576315	regulatory region 576315	1455 bp proximal
Rr576316	regulatory region 576316	1956 bp proximal
Tssr29053	transcription start site region 29053	1891 bp upstream
Tssr29054	transcription start site region 29054	1915 bp upstream