rs31137573 SNP Detail

Summary

• ID
  rs31137573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44150166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACC ACACAGCCAT CTCCCAGCCT
  Y
  TGCCTGGCAC CAAGTGGGTT CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46000624	mCV25287527	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss149113575	ENSMUSSNP2800973	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss322199070	CHEV_7_51756112	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31137573					SNP	C	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44150166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18970	CpG island 18970	292 bp distal
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Gm44646	predicted gene 44646	947 bp upstream
Mybpc2	myosin binding protein C, fast-type	957 bp downstream
Rr646111	regulatory region 646111	831 bp proximal
Rr646112	regulatory region 646112	958 bp proximal
Rr646113	regulatory region 646113	1166 bp proximal