rs31137679 SNP Detail

Summary

• ID
  rs31137679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75770105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCAATTG ACACTGCTGT
  TCCCCCAATG GGGTGGAAAC CCGTTTCCCA GCTCCTTTAG TCCCTTCTCC AACTTTTCCA
  CCTGGGACCC CATGCTCAGT CCACTATTGC AGATGCCAGG AAGTGCTTGC TGACAGGAGC
  CTGATATGGC TGTCTCCTGA AAAACTCTGC CAGAGCCTGA CAAATACAGA GGTGGATGCT
  Y
  GCAGTCACTG CTACATTTTT AAACAAAGTA TGTTTTAATA GGCTCTCCTT TCCCTATCTC
  CTCCATCCCT GCTACCCCTA ATCCACTTCA AGTCTCTGCT GCACATGTCC TTTGGTCCAC
  CCCATCCTCC CTTATCACCT AATTACCTCG CTCCTCTTCG TCTCTTTGTA CTTTAGGTTT
  TATATCCATT TACGTACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45501849	mCV23595023	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss135331372	ENSMUSSNP507430	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs31137679					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75770105 () rs orientation: forward

Symbol	Name	Function Class
Rr397723	regulatory region 397723	829 bp downstream
Rr578364	regulatory region 578364	1541 bp distal
Rr578365	regulatory region 578365	808 bp distal
Rr578366	regulatory region 578366	887 bp distal
Rr578367	regulatory region 578367	1609 bp proximal