rs31137743 SNP Detail

Summary

• ID
  rs31137743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44840486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGTGGC AGACATATGC
  CCCCAGATGT GGACCCCTGT AGTGACTTCA CAGTCACCTG CAAGCAGGTG GGTAGATCCA
  GGGCTGGCAC TGTCCATATT ACATTGGCTC TGTAAGTGTG TGGCTATATA GCCATTAATA
  GCATCCTTCC CTTCAGCTCT ACAGGAGGAA CTGAACAGAG GCTACGAGAC TTGGCAAGGC
  Y
  GCCCCATCTG TGTGATGCCC AGTCCCACCT CTAACACTCA GCCTCTGGGG GGGCGCAGAT
  AAAACTCTGG GTGACAAAAG CCTCGTGAGA AGTGGTGGTG TTGTATGCAC AAGGTGCACA
  GGGACCAGAA GTGGAACAAG GAAGACACAG ATTACACTAA GCCCAAGGCT CACTGAGAGA
  CTCAAGCTGG GTGGTAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46000426	mCV27567981	ABI	CRAMUS_MOUSE	f	SNP	T	C	T					T	T
ss51480566	NES13972103	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	C	T	C	T
ss149131079	ENSMUSSNP7139095	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31137743					SNP	T	C	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480566	NES13972103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44840486 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	within coordinates
Kash5	KASH domain containing 5	within coordinates
Rr646366	regulatory region 646366	639 bp proximal
Tssr72335	transcription start site region 72335	1496 bp upstream
Tssr72336	transcription start site region 72336	1412 bp upstream
Tssr72337	transcription start site region 72337	1349 bp upstream
Tssr72338	transcription start site region 72338	1253 bp upstream