rs31137825 SNP Detail

Summary

• ID
  rs31137825
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45434094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG TGTCTGTGTG CATGCAACTG
  K
  CTTTACGTGT TTGAGTTAGT GATTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46000716	mCV24380996	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G	T
ss149145028	ENSMUSSNP311097	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31137825					SNP	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45434094 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19088	CpG island 19088			501 bp distal
Cpgi19089	CpG island 19089			713 bp proximal
Cpgi19090	CpG island 19090			1808 bp proximal
Lmtk3	lemur tyrosine kinase 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr646575	regulatory region 646575			713 bp distal
Rr646576	regulatory region 646576			12 bp distal
Rr646577	regulatory region 646577			within coordinates
Tssr66636	transcription start site region 66636			938 bp downstream
Tssr66637	transcription start site region 66637			726 bp downstream
Tssr66638	transcription start site region 66638			661 bp upstream
Tssr66639	transcription start site region 66639			900 bp upstream
Tssr72472	transcription start site region 72472			356 bp downstream