rs31138035 SNP Detail

Summary

• ID
  rs31138035
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106431179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAATGG AGAGGAGCCT
  GAGGACAAGG TCCAGCAACA GGTCCAAAGT GGGATCCAGC TCAAGGGGAG GCCCCAAGGC
  CTGACACTAT TACTGAGGCT ATGGAGCACT CACAAAATGG GACCTATTGT GAATGCCCTC
  TGAAAGAAAC AACAAGCAGC TGAAAGAGTC AGATGCAGAT ATTTGCACCC AATCAATGGA
  S
  AGAAGCTGCT GACCCCTGTG GTTGAATTAG GGAAAAGCTG GTAGAAGCTG AGGAGGAGGG
  CAACCCTATA GAAGGACCAG CAGTCTCAAT TAACCTGGAA CAATGAGATC TCTCAGACAC
  TGGATCACTA ACCAGGCAGC ATACACCAGC TGATATGAGG CCCCCAACAC ATACATATAC
  AGCAGAGGAC TTCTGGGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45501522	mCV23490609	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss135579873	ENSMUSSNP2441012	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320863764	CHEV_3_106326781	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31138035					SNP	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106431179 () rs orientation: forward

Symbol	Name	Function Class
Cept1	choline/ethanolaminephosphotransferase 1	within coordinates
Tssr34972	transcription start site region 34972	1591 bp downstream