rs31138781 SNP Detail

Summary

• ID
  rs31138781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32734141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCGCGATC CAATTCTGCC GGGTTTTCAT AGCGGCCACG
  AAGTGGGGAT TGGGGGTGGG GGCTTAGCTC TTTGAAGACT GAGCTTGGCT GTGATCCGGT
  R
  GACCCACCGC TGCGGGGAGC TGCGGGTCTC ATCACCGGGC GGTGGAGGGG TGTGTGTGAG
  GTGCACTCTA TTCACGGAGA CCCACTTTGT CCAACCAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss44999562	mCV23043376	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss146334627	ENSMUSSNP6617911	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31138781					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32734141 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	within coordinates
Gm36566	predicted gene, 36566	within coordinates
Gm56634	predicted gene, 56634	264 bp upstream
Gm56643	predicted gene, 56643	within coordinates
Gm58496	predicted gene, 58496	812 bp upstream
Gm58497	predicted gene, 58497	963 bp upstream
Pten	phosphatase and tensin homolog	836 bp upstream
Rr370486	regulatory region 370486	59 bp downstream
Rr405924	regulatory region 405924	941 bp downstream
Rr546562	regulatory region 546562	656 bp distal
Rr546563	regulatory region 546563	within coordinates
Rr546564	regulatory region 546564	298 bp proximal
Rr546565	regulatory region 546565	662 bp proximal
Tssr5485	transcription start site region 5485	743 bp upstream
Tssr5486	transcription start site region 5486	939 bp upstream
Tssr5487	transcription start site region 5487	985 bp upstream
Tssr155991	transcription start site region 155991	1820 bp downstream
Tssr155992	transcription start site region 155992	835 bp upstream
Tssr155993	transcription start site region 155993	863 bp upstream
Tssr155994	transcription start site region 155994	906 bp upstream
Tssr155995	transcription start site region 155995	1584 bp upstream
Tssr158898	transcription start site region 158898	315 bp upstream
Tssr158899	transcription start site region 158899	581 bp downstream
Tssr158900	transcription start site region 158900	628 bp downstream