rs31139063 SNP Detail

Summary

• ID
  rs31139063
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146204464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCATACA TTACAGGTAA
  CAAGGCACAA AGTAAAATAT TTGTGTTACA TTTTGCATTA ATTAATTTAT TTTGGAGGCA
  CAAGCCTTTA ATCACAATGC TTGGAAGGCT GTGGGTTTCG AGGCCAGCCT GGTCTACATG
  GAGTTTCAGG CCAGCCAGAA CTACAAAGTG AGACCCTGTC TCAAACAATA TGGTTTGTTC
  S
  TTCACTTTTT AAATTATGTA TTAATTAATG TACGTGTGTG AATGCAAACG TTCCCAGACT
  CCAGTGAGGG TGACAGTAGC CCAGGACTTG GTGCTTTTGA GTTGCCCAGT GTGGGTGGTG
  GGAAGTGTGA CCTTAGGTCC TCTGCACGAG GGCTCAGTTC CCCAGTCCTC TAACTGCCAT
  CTTCCAGCCT CAGTTTTCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45503205	mCV25040873	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	G
ss321010536	CHEV_3_146161673	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31139063					SNP	G	C	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146204464 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13920	CpG island 13920	628 bp proximal
Gng5	G protein subunit gamma 5	1127 bp upstream
Rr77342	regulatory region 77342	within coordinates
Rr398118	regulatory region 398118	1683 bp upstream
Spata1	spermatogenesis associated 1	within coordinates
Tssr32351	transcription start site region 32351	996 bp upstream
Tssr32352	transcription start site region 32352	1119 bp upstream
Tssr32353	transcription start site region 32353	1141 bp upstream
Tssr32354	transcription start site region 32354	1362 bp upstream
Tssr32355	transcription start site region 32355	1422 bp upstream
Tssr32356	transcription start site region 32356	1452 bp upstream
Tssr32357	transcription start site region 32357	1480 bp upstream
Tssr36036	transcription start site region 36036	1012 bp downstream
Tssr36037	transcription start site region 36037	1098 bp downstream
Tssr36038	transcription start site region 36038	1379 bp downstream