rs31139299 SNP Detail

Summary

• ID
  rs31139299
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91177455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA CATGGAACCC CAAGGCCTCA
  S
  GAGGTAGGGT CTCTCTACAT ATCTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss44999665	mCV25408048	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss144943400	ENSMUSSNP2377992	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss319839833	CHEV_1_93146310	CHEVERUD	SCREENING_POP	f	SNP				C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs31139299					SNP	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91177455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	163 bp proximal
Rr366958	regulatory region 366958	212 bp upstream
Rr415585	regulatory region 415585	1792 bp distal
Rr415586	regulatory region 415586	397 bp distal
Rr415587	regulatory region 415587	88 bp proximal
Rr415588	regulatory region 415588	844 bp proximal
Tssr8065	transcription start site region 8065	460 bp upstream
Tssr8066	transcription start site region 8066	564 bp upstream
Tssr8067	transcription start site region 8067	578 bp upstream
Tssr8068	transcription start site region 8068	749 bp upstream
Tssr8069	transcription start site region 8069	842 bp upstream
Tssr12938	transcription start site region 12938	307 bp downstream
Tssr12939	transcription start site region 12939	1639 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates